PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001825
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 251aa    MW: 26286.1 Da    PI: 4.3972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001825genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-06125146223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  C k F++ s L +H+rtH
  Lus10001825 125 PCVVCQKAFRSFSALIHHLRTH 146
                  5********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF576677.02E-5123149No hitNo description
PROSITE profilePS501579.556124146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-6126147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNTDKQSTTS TSTDEHVIPP TAGSACDAAA TGGDAGNEVH PPTVVEDLTP PNIGGRSASA  60
TAAKGKGKVV QGEGAGDEEN ETDVNNAAAE MAPEGESEPI TLNTVLLSGI PSIMRRKLLK  120
GVPSPCVVCQ KAFRSFSALI HHLRTHGEDV FRRITVTYDV RAIAPITELE HNGEAAENKA  180
LTGGNEAVAR NKTLTSDSEE AVPSKTLTGD KEETVRNEIL IGVPAGPSLQ RDNMDLDFDL  240
NLPLPEAQED *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001825
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100018250.0(Linum usitatissimum)