PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 197aa    MW: 22482.6 Da    PI: 7.864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001106genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-053962123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 ++C++C+ksF+   +L +H  + H
  Lus10001106 39 WQCGYCKKSFRAETYLDQHFDSmH 62
                 58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2033962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPFVEQERYQ IPTNCRLHPS NDLFRDQEQH KINYDFNQWQ CGYCKKSFRA ETYLDQHFDS  60
MHFDLLNFTD IKCLADICGA LHCDSVMDSK SVKKIRCHPA AASKNRHLCE SLADSCFPLN  120
LGRSAARLHD LFLHQFCDAL TCAGKNKLFP KGGKNTGFYF QVNEAHDGGV SYLNLHNMKI  180
TSTSLLFSML TLQRCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024088.12e-84PREDICTED: uncharacterized protein LOC105125376
RefseqXP_011024089.12e-84PREDICTED: uncharacterized protein LOC105125376
TrEMBLB9IF524e-82B9IF52_POPTR; Uncharacterized protein
STRINGLus100011061e-146(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.12e-74C2H2-like zinc finger protein