PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000532
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 201aa    MW: 23344.2 Da    PI: 5.4324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000532genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.25.1e-371196172374
         GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysa 266
                  +++++++n l  ++l++l+++ ++ +++E+l+V+ +++lh+l    ++ ++er+e+L++++sl+Pk v+++e+++d++ +   ++  +f++ +ey + 
  Lus10000532   1 MNINLQINRLDNRSLQNLNTQVINKDREETLVVCAQFRLHHLN---HNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNgcvDYSSGFTRRVEYLWR 95 
                  79*******9999*****************************8...55566667********************8883333459************** PP

         GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                  ++ds+++ +    + r + Er++++ e+ ++++++g++    +e++e+W er++ +GF+   + e+a ++a++llrk++ ++++rvee++g + l Wk
  Lus10000532  96 FLDSTSSAF----KGRESEERRMMEGEAAKALTNSGEM----NERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDnNWEMRVEEKDGFVGLWWK 185
                  *****7775....66666667777777999******99....88888********************************9999*************** PP

         GRAS 364 drpLvsvSaWr 374
                  ++p+ ++S W+
  Lus10000532 186 GQPVSFCSLWK 196
                  **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.5851175IPR005202Transcription factor GRAS
PfamPF035141.7E-341196IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNINLQINRL DNRSLQNLNT QVINKDREET LVVCAQFRLH HLNHNNPDER SEFLRVLRSL  60
EPKGVILSEN NMDCSCNGCV DYSSGFTRRV EYLWRFLDST SSAFKGRESE ERRMMEGEAA  120
KALTNSGEMN ERKEQWCERM RGVGFSGEGF CEDAIDEARA LLRKHDNNWE MRVEEKDGFV  180
GLWWKGQPVS FCSLWKLQAE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000532
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294785.11e-116nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-105NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A061GJK71e-114A0A061GJK7_THECC; Nodulation-signaling pathway 1 protein, putative
STRINGLus100005321e-146(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-66GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]