PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 197aa    MW: 21977.1 Da    PI: 9.4284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000130genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000113657323
                 ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                 C+ C++ ++++ +L  Hi+  H
  Lus10000130 36 CSVCHRAYPTSRLLSMHISEaH 57
                 ******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035588832IPR015880Zinc finger, C2H2-like
SMARTSM003556.13457IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803657IPR007087Zinc finger, C2H2
SMARTSM003550.0467297IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDEDAEVMFC PIVGCRAPLS TMGFENHYIS QHTAACSVCH RAYPTSRLLS MHISEAHDSF  60
FQAKVARGYP MYECLVEGCG LKFKSYKGRQ KHLVDKHKFP ASYDFFKKGH HLSKKARGKI  120
HCKKTTATRK NDEEGSSKMD ADEEEEVENL TSALSKMTTG STPKSVSFGR GNARGLTFVP  180
RSVQRDVKKP DPTPRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628544.17e-82PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 511
TrEMBLA0A2P5YLN08e-80A0A2P5YLN0_GOSBA; Uncharacterized protein
STRINGLus100001301e-145(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.16e-72zinc ion binding;nucleic acid binding;zinc ion binding