PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019084
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 446aa    MW: 48119.3 Da    PI: 8.0485
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-54132PU_refplantGDBView CDS
PUT-187a-Lactuca_sativa-54133PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.4e-1681168186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  +  L++ ++++  +l+r++l++++We v++ +    ++  ++s +qCk+k++nl+kryk ++++++++  +s+s++ +f+++e
  Lsa019084  81 EWSDTAIAILLDSYTDKYMALNRSNLRGKDWEVVAELVtegCDKHSRKSIEQCKNKIDNLKKRYKLETQRMESN-GGSVSSWIWFKKME 168
                5*************************************665556677899*******************99996.78889********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-1879169No hitNo description
Gene3DG3DSA:3.40.1160.105.7E-68207445IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.833215445IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.93E-55215444IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.86E-111218445No hitNo description
PfamPF006963.2E-21218424IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAQSTNAESP PIGEGSNNIN NGDSTAIVAT ANSPATPAAV NSPGTGEDLT KSGEITPNGR  60
RSKKPKHESS AGGDHRKERE EWSDTAIAIL LDSYTDKYMA LNRSNLRGKD WEVVAELVTE  120
GCDKHSRKSI EQCKNKIDNL KKRYKLETQR MESNGGSVSS WIWFKKMERV FGNATITKSG  180
AASDDDKSIR VSSAQRPRRS ASIPVLDNIK TTTNTKWKRV VFKVSGTSLA GSGQSIDPKV  240
ALQIAEEVAT ASRCGVEVAI IIGGRNFFCG DSWVSATDLD RPTAYQIGMM ATVMNSILLQ  300
SALEKLNIQT RVQSAFVMPE IAEPYNRLRA MRHLDKGRVV IFGGVGAGTG NPLFTTDTAA  360
ALRASEINAD AVIKGTNVNG ICDKNNVALD HISFRDAVSR DCSSMDLMAI QFCEENAIPV  420
VIFNMLEPGN VSKALTGEQV GTLIEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-592134465241Uridylate kinase
3ek5_B4e-592134465241Uridylate kinase
3ek5_C4e-592134465241Uridylate kinase
3ek5_D4e-592134465241Uridylate kinase
3ek5_E4e-592134465241Uridylate kinase
3ek5_F4e-592134465241Uridylate kinase
3ek6_A4e-592134465241Uridylate kinase
3ek6_B4e-592134465241Uridylate kinase
3ek6_C4e-592134465241Uridylate kinase
3ek6_D4e-592134465241Uridylate kinase
3ek6_E4e-592134465241Uridylate kinase
3ek6_F4e-592134465241Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754573.10.0uncharacterized protein LOC111903011 isoform X2
SwissprotQ3AV983e-76PYRH_SYNS9; Uridylate kinase
TrEMBLA0A2J6LYK40.0A0A2J6LYK4_LACSA; Uncharacterized protein
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-165Trihelix family protein