PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018903
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 529aa    MW: 58178.2 Da    PI: 7.6212
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-35840PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81e-16120208186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++  +  L++a+ e+  +l+rg+l+  +Weev++++  r +  ++s +qCk+k +nl+kryk ++++  ++   +++s++p+++++e
  Lsa018903 120 EWSDTAIAFLLDAYLEKFMQLNRGNLRVRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRVMNNnGGNTTSHWPWYQKME 208
                5*************************************666677899*****************9988654442367788********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-19118210No hitNo description
CDDcd042542.73E-102266523No hitNo description
PfamPF006965.6E-15267502IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.105.8E-52319522IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.27E-41319522IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
XSHQTNQRFH HHLSTTAHLL ASKAPPFNAL PPPGATHDGV LQASGEGYSD HAFGSQPMVV  60
VTYENESDPN RSGISAARNE KRSDCEDLSD GGTPYSYNKK SKVAGSSSGN GGEYRKDREE  120
WSDTAIAFLL DAYLEKFMQL NRGNLRVRDW EEVAAVVSER CENQSKSVEQ CKNKVDNLKK  180
RYKLERHRVM NNNGGNTTSH WPWYQKMEQI VGNSLPLKPA LDEDKSVGGI NSSARQSKRY  240
TTATSSPNNH QITNMEPKSV TNPRWRRVVF KISGSAFTGT DSQNIDPKEI KGKILSFHNI  300
QTSVGFFVFG FLYSIGSNAI AREVSIACHI GIEVAIVVGG RNFFCGDTWV TSNGLDRTTA  360
YQIGMMTTVM NSILLQSTLE KLGVVTRVQS SFCMPEVSEP YNKQRAIRHL EKGRVVIFGG  420
IGAGTGNPLF STDTAAALRA SEIHADVVIK GSSLHGIYDC AIGESEYEHI SFREFASRGV  480
ALMDMMAVTF CQENGIPVVM FNLDEVGNIS RALCGEHIGM LIDLNGRVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A8e-5232052277279Uridylate kinase
3nwy_B8e-5232052277279Uridylate kinase
3nwy_C8e-5232052277279Uridylate kinase
3nwy_D8e-5232052277279Uridylate kinase
3nwy_E8e-5232052277279Uridylate kinase
3nwy_F8e-5232052277279Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745955.10.0uncharacterized protein LOC111894112 isoform X1
TrEMBLA0A2J6JP350.0A0A2J6JP35_LACSA; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein