PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018845
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 346aa    MW: 40440.1 Da    PI: 4.4675
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687424PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-42140PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.23.6e-12119211186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk......rtsessstcpyfdqle 86 
                +W+++ + +L+e+  ++  +l+r++l++ +W ev++k++e  ++e++ +qC++++e l+k+ykk+k+ +++      ++++ + ++ +f++++
  Lsa018845 119 EWSENATFVLLEVWGDRYLQLGRKSLRGDDWVEVAEKVSEMcKMEINETQCRNRLETLKKKYKKEKAKMEDmgmggrGSEGYHGKWGFFKRMD 211
                5*************************************775378**********************976541111113455556677777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.3E-20118212No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDYNPSVRPR RPVRNNNNYH GNSTYNEYEN DEFEEENEGL NQRYGYQEDD EEEEEDDDEY  60
QHGYYRVSGG GIDAGESSRR HQKKRRLDNL VSNYEFAPRT NANPSKEAYG GVPDRSGDEW  120
SENATFVLLE VWGDRYLQLG RKSLRGDDWV EVAEKVSEMC KMEINETQCR NRLETLKKKY  180
KKEKAKMEDM GMGGRGSEGY HGKWGFFKRM DMLLSPKKQH NGLPCGVDSG EYVFMNTKVY  240
LNQSNALDEM RDSPGESESD EDDSDDRKDD DGFRLLAESV QNFGEIYEKI EGRKRQQMMD  300
LEKMRMDFQR ELELQKKQIL ERAQEEIAKI REGDDEDVNS VENLSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735924.10.0trihelix transcription factor ASIL2
TrEMBLA0A2J6KAT80.0A0A2J6KAT8_LACSA; Uncharacterized protein
STRINGVIT_11s0016g04130.t015e-98(Vitis vinifera)