PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018363
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 321aa    MW: 34475 Da    PI: 7.693
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39710PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.83.3e-3748143489
        TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........k 89 
                k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ +  + s + s+s+s +g         +
  Lsa018363  48 KRGTTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYTsLNISLRGSGSTSMAGptsylrnglS 143
                7889**********************************************************9999977655555555555444334444444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3651158IPR005333Transcription factor, TCP
PROSITE profilePS5136927.04852106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGHEDQTPF HRQNHPLQLL EERSGGVNGE EYSTTELQPA PKAKPLQKRG TTKDRHTKVD  60
GRGRRIRMPA VCAARVFQLT RELGHKSDGE TIEWLLQQAE PSVIAATGTG TIPANYTSLN  120
ISLRGSGSTS MAGPTSYLRN GLSFVTNQPT STSHFATPVT KDDEFCLDPR SIQMGVTSNY  180
MTQSTIPACH NQIPATAAFL MMGNRNSGST SPDTRSSRAF SGESTWNFPS TSNTSSNDNH  240
NSNLYNRGSS RTNLNGISDE DVGGGLHLMN FGAQTALLNG QQFGGGALPT TDGMLAALSS  300
IRPTYGGGSS YLINANTTRN E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731371.10.0transcription factor TCP15-like
TrEMBLA0A2J6KL620.0A0A2J6KL62_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-48TCP family protein