PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 286aa    MW: 32513.8 Da    PI: 9.143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684611PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-30377PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.6e-33571971128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 
                lp+G++F+P+d+el+ e+L++kv+ +    +        +i++v+    i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      + +W
  Lsa018128  57 LPAGVKFDPSDHELL-EHLEAKVRLDAhriH---PlideFIPTVEgengICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHseidgsETRW 151
                799************.99*****99984551...233333444433444**********.555666688******************855455555788* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++v+  k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Lsa018128 152 HKTGKTRPVFL-KTKVKGYKKILVLYanYGKQKKPEKTNWVMHQYHL 197
                ***********.8999**********6668999************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3750216IPR003441NAC domain
PROSITE profilePS5100532.66857216IPR003441NAC domain
PfamPF023652.6E-1558197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTWCSDCSDT PGVIIKRFPS SNDNNSIMDN KKTVPCPSCG HRINCYEKAR IHDLPGLPAG  60
VKFDPSDHEL LEHLEAKVRL DAHRIHPLID EFIPTVEGEN GICYTHPEKL PGVSKDGLVR  120
HFFHRPSKAY TTGTRKRRKV HSEIDGSETR WHKTGKTRPV FLKTKVKGYK KILVLYANYG  180
KQKKPEKTNW VMHQYHLGNN EDEKEGELVV SKIFYQTQPR QCGSNVVKDN IISPLVKSNG  240
RNAHEVTHGT NNTTFVEYFS PSLVSYQQNL QHAHDLNLHD GSSVVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517849.11e-141PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A118JY891e-180A0A118JY89_CYNCS; No apical meristem (NAM) protein (Fragment)
STRINGPOPTR_0017s04800.11e-135(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73