PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 295aa    MW: 33782.9 Da    PI: 8.8353
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678438PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.82.2e-431072483136
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg....kaaksaa 95 
                 kkd hski T++g+RdRRvRls+++a++fF+Lq++LGfdk+skt++WL++++k aikel++ +  s+s++    + +    ++ ++++    +  + ++
  Lsa017726 107 SKKDGHSKINTAQGPRDRRVRLSIDIARKFFELQNMLGFDKASKTLDWLFTKSKVAIKELVKETKHSSSSTvstGQCELAFLDDDEGENksefRFVNGKM 206
                69*************************************************************6666655554433333333332222244556666777 PP

        TCP  96 kskksqksaasalnlak.esrakarararertrekmriknkl 136
                k+  +++++ +  ++a+ +sra+arararert+ekmrik ++
  Lsa017726 207 KKITQKQKSGHRVDVAReQSRAEARARARERTKEKMRIKMQQ 248
                555555555555666666********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-37107243IPR005333Transcription factor, TCP
PROSITE profilePS5136934.659108166IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.178224241IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
ESINFQILFL NTMFSSNLSQ KIPSSSHVSP TFSSFFEKVG FYFSHHENNS NPFVSPPPSS  60
PPPEVTANTQ DLTCQQVQEG SVLQYSDDYD DLLESIVYPC KKKTVNSKKD GHSKINTAQG  120
PRDRRVRLSI DIARKFFELQ NMLGFDKASK TLDWLFTKSK VAIKELVKET KHSSSSTVST  180
GQCELAFLDD DEGENKSEFR FVNGKMKKIT QKQKSGHRVD VAREQSRAEA RARARERTKE  240
KMRIKMQQYD LKKFPDEYSC HAVSSSNLTI QSSFWGQIES QSDYNESIVE KMFFM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269|PubMed:16236768, ECO:0000269|PubMed:8893002}.
UniProtInvolved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746487.10.0transcription factor CYCLOIDEA-like
SwissprotO492504e-28CYCLD_ANTMA; Transcription factor CYCLOIDEA
SwissprotQ9SBV63e-28CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBLA0A2J6MA160.0A0A2J6MA16_LACSA; Uncharacterized protein
STRINGXP_009592164.13e-33(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-26TCP domain protein 12
Publications ? help Back to Top
  1. Vieira CP,Vieira J,Charlesworth D
    Evolution of the cycloidea gene family in Antirrhinum and Misopates.
    Mol. Biol. Evol., 1999. 16(11): p. 1474-83
    [PMID:10555278]
  2. Gubitz T,Caldwell A,Hudson A
    Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives.
    Mol. Biol. Evol., 2003. 20(9): p. 1537-44
    [PMID:12832647]
  3. Reeves PA,Olmstead RG
    Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution.
    Mol. Biol. Evol., 2003. 20(12): p. 1997-2009
    [PMID:12885953]
  4. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  5. Luo D,Carpenter R,Vincent C,Copsey L,Coen E
    Origin of floral asymmetry in Antirrhinum.
    Nature, 1996. 383(6603): p. 794-9
    [PMID:8893002]