PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017165
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 422aa    MW: 47655 Da    PI: 6.1334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688930PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-12474PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.7e-2496200186
   trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                +Wt+++v++Li ++ +++++ ++++                  +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++
  Lsa017165  96 KWTDNMVRLLIMVVFYIGDEGGSEQpsgsdtaakkkgggggvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQSL 195
                7**************999999987667788899999999**************************************************55********* PP

   trihelix  82 fdqle 86 
                ++ ++
  Lsa017165 196 LETMD 200
                **998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2194226No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
METNGMFSNT SGGSGMLGLE MSLNHQQNPN FLHQQPPFAA AAAAKQGYPY AAPKQRASPI  60
SDEEEPHSNN LNNPSTTEDS GGDGKLRKGS PWQRMKWTDN MVRLLIMVVF YIGDEGGSEQ  120
PSGSDTAAKK KGGGGGVLQK KGKWKSVSRA MMERGFYVSP QQCEDKFNDL NKRYKRVNDI  180
LGKGTACKVV ENQSLLETMD HLSAKLKEEA KKLLNSKHLF FREMCAYHNS CGGGSGGSGA  240
AHHSSPPEVT TTEQPPHHRQ NCVHSNNEDE EDDDEGEDDE DDGDGHPDEE EDDGLSSRKR  300
GRTAENDGHD GIIQQFNGEI SCVMQDLAKS VWEKRQWMKV KMMQLEEQRV GFQGQSYELE  360
KQRLKWVKFS CKKEREMEVE KLRNERMKLE NERMVLLLRQ KEMELVDLQH QYSSNLHKRT  420
TD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758073.10.0uncharacterized protein LOC111906557
TrEMBLA0A2J6LR200.0A0A2J6LR20_LACSA; Uncharacterized protein
STRINGEOY080791e-142(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-90sequence-specific DNA binding transcription factors