PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 350aa    MW: 38782.6 Da    PI: 8.8864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685044PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-5597PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-54151421128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLkk++++++l++  +i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ ++++
  Lsa015455  15 LPPGFRFHPTDEELVVHYLKKRAASTPLPV-AIIAEIDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAANSGYWKATGTDKPVMTSgGTQK 113
                79****************************.88***************988899****************************************977788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Lsa015455 114 VGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-658176IPR003441NAC domain
PROSITE profilePS5100561.90715176IPR003441NAC domain
PfamPF023656.6E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESTDSSTGS QLLQLPPGFR FHPTDEELVV HYLKKRAAST PLPVAIIAEI DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ANSGYWKATG TDKPVMTSGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLTDGKTISK PHGCDPTKQK GSLRLDDWVL CRIYKKNNLQ  180
RPMDSDGSDH LHNMNGMLSS IPPSISLAGG HQGTIVKQTA GVGYNAMMEN HEHNLMFDAR  240
INSNDTDTNT SNLLPMKRSM PGLFWNEDAG AGAGNTGNST STYTKRFLTE SNSDVSVMAT  300
RNNEENSGSI ASLLSQLPQT QQMQPQAMLG SLEDGVFRQP YQLPGINWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-771317815167NO APICAL MERISTEM PROTEIN
1ut4_B1e-771317815167NO APICAL MERISTEM PROTEIN
1ut7_A1e-771317815167NO APICAL MERISTEM PROTEIN
1ut7_B1e-771317815167NO APICAL MERISTEM PROTEIN
3swm_A2e-771317818170NAC domain-containing protein 19
3swm_B2e-771317818170NAC domain-containing protein 19
3swm_C2e-771317818170NAC domain-containing protein 19
3swm_D2e-771317818170NAC domain-containing protein 19
3swp_A2e-771317818170NAC domain-containing protein 19
3swp_B2e-771317818170NAC domain-containing protein 19
3swp_C2e-771317818170NAC domain-containing protein 19
3swp_D2e-771317818170NAC domain-containing protein 19
4dul_A1e-771317815167NAC domain-containing protein 19
4dul_B1e-771317815167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021327.11e-159NAC domain protein, IPR003441
SwissprotQ9LD441e-111NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A103YJX30.0A0A103YJX3_CYNCS; No apical meristem (NAM) protein
STRINGVIT_19s0014g03300.t011e-149(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-107NAC domain containing protein 2