PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 390aa    MW: 43106.9 Da    PI: 4.7774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-8869PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.22.5e-30561962128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgyWk 84 
                p G++F+Ptd el+ e+L++k+   +      +  +e+i+++d    i+  +P++Lp  ++++ ++++fF ++ ++y+tg+rk+r+       t++ +W+
  Lsa014722  56 PLGVKFEPTDVELL-EHLAAKCGVGNkkphqfI--DEFIPTIDvdegICCKHPENLPG-ATKDGNSVHFFYRNTNAYTTGQRKRRKiskesglTNDVRWH 151
                89************.899999765553454322..2346555444559*********4.45667899******************878999998999*** PP

        NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +tgk+k v++ +g+++g+kk++v+y   g  +k+ k +Wvmh+y+l
  Lsa014722 152 KTGKTKGVIQ-NGAQIGCKKIMVLYgtAGGGSKPYKLNWVMHQYHL 196
                *********9.999***********7766778888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3540215IPR003441NAC domain
PROSITE profilePS5100529.06755215IPR003441NAC domain
PfamPF023653.6E-1356196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAKSWLVDGR SIARKVKTSS LPLVHQIKDC GANRECPQCH YKIDNSNVSV EWPGFPLGVK  60
FEPTDVELLE HLAAKCGVGN KKPHQFIDEF IPTIDVDEGI CCKHPENLPG ATKDGNSVHF  120
FYRNTNAYTT GQRKRRKISK ESGLTNDVRW HKTGKTKGVI QNGAQIGCKK IMVLYGTAGG  180
GSKPYKLNWV MHQYHLGTIE DEKEGQYVVS KIFYQPQKQE NHEESDVWMS LTSPRTPNTG  240
APDPPRAGKS VACDDVTTGY VLESPPQPPL PPQESELCDE QKYLPSCSNA EGKENLELPI  300
WEDDSQAVDL DDLDNFGDSL FCKENLDIHA LQSCSNVDTN VGASSGVGDL ENLDLGTPPD  360
FNLAGLQFSS QDSIFDWLXA VIEDGNDVGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799111.11e-139PREDICTED: NAC domain-containing protein 8-like
RefseqXP_016444166.11e-139PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-78NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A103YHF10.0A0A103YHF1_CYNCS; No apical meristem (NAM) protein
STRINGPGSC0003DMT4000328291e-134(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.17e-91NAC domain containing protein 85