PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 289aa    MW: 32608.3 Da    PI: 7.8285
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686001PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-49234PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.81.2e-3147155289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl  ak++i+el+ ++ +s ++ ++ +s  +++++s++             
  Lsa014310  47 FGGKDRHSKVCTVRGLRDRRVRLSVQTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLQMPSGNFGQNLQSMINVASHSENlesvrtntnglnw 146
                689*************************************************************888886666666666666555555555445555555 PP

        TCP  89 ........k 89 
                        +
  Lsa014310 147 edywnpdkS 155
                555544331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.79549107IPR017887Transcription factor TCP subgroup
PfamPF036346.1E-3049156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNILNTRESD DEKSTNNGKN IIPNPNLTTS SWTKLRDPRI VRVSRAFGGK DRHSKVCTVR  60
GLRDRRVRLS VQTAIQLYDL QDRLGLNQPS KVVDWLLDVA KHEIDELPPL QMPSGNFGQN  120
LQSMINVASH SENLESVRTN TNGLNWEDYW NPDKSKENKD HFFVQSSTQS SSLPVVCNNV  180
VPNGSFLKLN PSNLSLSQFG SYGSMAHHQE NASDNFNHIA YPLPSHDHNV RYQFDPKQLT  240
FEMLSSSSSS SHQQPLSSSP LYTINQGMVR PLHLSMNPKL FPSEENGHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1954108155Putative transcription factor PCF6
5zkt_B5e-1954108155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770796.10.0transcription factor TCP17-like
RefseqXP_023770797.10.0transcription factor TCP17-like
RefseqXP_023770798.10.0transcription factor TCP17-like
TrEMBLA0A2J6KY950.0A0A2J6KY95_LACSA; Uncharacterized protein
STRINGEOY036995e-67(Theobroma cacao)
STRINGcassava4.1_010816m5e-67(Manihot esculenta)