PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013590
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 264aa    MW: 30457.2 Da    PI: 7.2
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14994PU_refplantGDBView CDS
gnl|UG|Lsa#S58682867PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.5e-1423106186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Lie   ++  +l+rg+l++++W++v++++     e +  r+ +qCk++++ l+k+yk +k           s++p+f++l+
  Lsa013590  23 CWSEGGTETLIESWGDRYLQLNRGNLRQKDWKDVAEAVnanrDELKPPRTDVQCKNRIDTLKKKYKLEKSKPTP------SKWPFFHRLD 106
                7*************************************999989999*******************99987775......68******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-2621108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSNNQITHS SRHHGGGGGR EDCWSEGGTE TLIESWGDRY LQLNRGNLRQ KDWKDVAEAV  60
NANRDELKPP RTDVQCKNRI DTLKKKYKLE KSKPTPSKWP FFHRLDDLIG TANSVTRKKI  120
STPKSASVTT LTVKSNPKTN HNPNPNPNLK AIAYSGGYSS HDESLSRMES LDFAEETTAY  180
KELARAILRF GEVYERIENS KQEEMMKLEK QRMEFTKEVE FQRLNMFMEA QLELEKDEEE  240
EEAIHNRLVD SRKEIGAMMK INCM
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748547.11e-142trihelix transcription factor ASIL2
SwissprotQ9LJG83e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2J6JIC01e-141A0A2J6JIC0_LACSA; Uncharacterized protein
STRINGSolyc06g051120.2.17e-86(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-52sequence-specific DNA binding transcription factors