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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa013590 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 264aa MW: 30457.2 Da PI: 7.2 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.7 | 3.5e-14 | 23 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Lie ++ +l+rg+l++++W++v++++ e + r+ +qCk++++ l+k+yk +k s++p+f++l+ Lsa013590 23 CWSEGGTETLIESWGDRYLQLNRGNLRQKDWKDVAEAVnanrDELKPPRTDVQCKNRIDTLKKKYKLEKSKPTP------SKWPFFHRLD 106 7*************************************999989999*******************99987775......68******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.0E-26 | 21 | 108 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDSNNQITHS SRHHGGGGGR EDCWSEGGTE TLIESWGDRY LQLNRGNLRQ KDWKDVAEAV 60 NANRDELKPP RTDVQCKNRI DTLKKKYKLE KSKPTPSKWP FFHRLDDLIG TANSVTRKKI 120 STPKSASVTT LTVKSNPKTN HNPNPNPNLK AIAYSGGYSS HDESLSRMES LDFAEETTAY 180 KELARAILRF GEVYERIENS KQEEMMKLEK QRMEFTKEVE FQRLNMFMEA QLELEKDEEE 240 EEAIHNRLVD SRKEIGAMMK INCM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023748547.1 | 1e-142 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-35 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2J6JIC0 | 1e-141 | A0A2J6JIC0_LACSA; Uncharacterized protein | ||||
STRING | Solyc06g051120.2.1 | 7e-86 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 2e-52 | sequence-specific DNA binding transcription factors |