PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 469aa    MW: 54609.8 Da    PI: 6.9702
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687423PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix803.4e-25109196186
   trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW++qe+laL+e+r++++  +++   ++ k+plW+e+s+ m ++ g++rs  +Ckek+enl k+ykk+keg+ ++   + +++++f+qle
  Lsa013232 109 RWPRQETLALLEIRSRLDPCFKEatsSNHKAPLWDEISRIMnEDYGYQRSGRKCKEKFENLYKYYKKTKEGKVGK--HDGKHYRFFRQLE 196
                8*********************8444589************7778****************************96..56667******98 PP

2trihelix40.95.2e-13360438278
   trihelix   2 WtkqevlaLiearremeerlrrgklk..kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                W + e+  Li++r+e+e r+++ +++  ++lW+ev+  ++  g++rs  +Cke we++  ++ k+k   ++ ++e+ss+
  Lsa013232 360 WIETEICSLIRIRTEKECRFQDVNQEhgEGLWQEVAFELSLLGYSRSDSECKEIWEKICVDFNKTKMVCESMKKEDSSR 438
                9********************866554499************************************9999987777754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.18E-17108177No hitNo description
PfamPF138375.4E-18109198No hitNo description
PROSITE profilePS500906.725109170IPR017877Myb-like domain
PfamPF138375.4E-10358430No hitNo description
PROSITE profilePS500906.168374418IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
XFIQPYLKIY SITTYYMDHG RYGQPAFTTG HTRVHFNSRI PSLDSEVPFY MSQVLNPDAP  60
PPHTFRDNPT VTPPPPPPAY SPQTGWNGFN SGINLNHGTT SYAQSTTIRW PRQETLALLE  120
IRSRLDPCFK EATSSNHKAP LWDEISRIMN EDYGYQRSGR KCKEKFENLY KYYKKTKEGK  180
VGKHDGKHYR FFRQLESLFG DQHDHRSINN NILIHPSSQS NNSSEHGTPS SEKNRSNRKL  240
KEKEMIAVIE ESMESQFSKL MAKQDEFGKK ILCTIERKEH EREVSNEEWR KQEVARLDHE  300
CEAWASHVAR IETRDECLLN ALQNLLRVRS IGSSYRSMVP TENSKEINGC LGNYEKHKDW  360
IETEICSLIR IRTEKECRFQ DVNQEHGEGL WQEVAFELSL LGYSRSDSEC KEIWEKICVD  420
FNKTKMVCES MKKEDSSRTS NSMDDKEDRN SCFSATAMNI DGERSWETM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754615.10.0trihelix transcription factor PTL-like
TrEMBLA0A2J6LZ260.0A0A2J6LZ26_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-70Trihelix family protein