PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 524aa    MW: 61066.2 Da    PI: 6.598
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695180PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.41.6e-1294143256
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 
                W+++ev +L++++++ e+++r+       W++vs+k++e g++rs+++Ckek+e+
  Lsa012636  94 WSNDEVIQLLRIKSSSENWFRDL-----TWDHVSRKLAELGYKRSAQKCKEKFED 143
                *********************97.....9************************98 PP

2trihelix93.32.4e-29391491185
   trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                rW+++evlaLi++r+++++ l+ ++                   + lWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy++
  Lsa012636 391 RWPRDEVLALINIRSNVNNGLGGNNedhqgyignngggggggVGGSLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SLDSRTCPYYH 489
                8****************999997666778888999999999999*******************************************8.9999******* PP

   trihelix  84 ql 85 
                ql
  Lsa012636 490 QL 491
                *9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-992147No hitNo description
PROSITE profilePS500905.9793145IPR017877Myb-like domain
CDDcd122031.72E-20390472No hitNo description
PfamPF138371.3E-17390491No hitNo description
PROSITE profilePS500906.307391465IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MFDGVPLEQF RQFISTPSSR IPTNSSLIQT TPISTPANLN FLSFDPLLFT PTLPTPHHHQ  60
SLFQSQHFLR TPTRDHYNDT EGKVDQEIDI NDSWSNDEVI QLLRIKSSSE NWFRDLTWDH  120
VSRKLAELGY KRSAQKCKEK FEDETCRSFG STIGYNKDSS RYLISEELDE HLYNNADQNT  180
HHDHITTESP EDLSYQENAQ VHEQRVEEQD LEVQGQKDHF IEDVSEIMMQ KSQDNVHVIN  240
SKKRKRKHKK FKMVKGLCVD LVKKMMAQQE EMHKKLLDDM RNREEEKIKR EEAWRKEETE  300
RVKREIHIRE HEQEMAKDRQ STITEFLNKI TSFDQKIQIP FDMNLQELQT NLSNINKQIP  360
LCEITKIPSS EKITENPHQN QSTSKDDIGK RWPRDEVLAL INIRSNVNNG LGGNNEDHQG  420
YIGNNGGGGG GGVGGSLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDANKKRSL  480
DSRTCPYYHQ LSILYNQEKQ ASNSVGLSFD DPEKCVIVEI TPEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246KKRKRK
2241249KKRKRKHKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771582.10.0trihelix transcription factor GTL2
TrEMBLA0A2J6KWJ90.0A0A2J6KWJ9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-61Trihelix family protein