PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011991
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 300aa    MW: 33847.4 Da    PI: 9.4745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680707PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.81.7e-1932124187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqlea 87 
                +W+++e+ aLi+a+r ++ +l+rg+l++p+W+ev++ +          ++++qC++k+e+l+kry+++ ++  +     +  s++++f+q++a
  Lsa011991  32 CWSHDETVALIDAYRGKWYSLQRGNLRAPHWQEVADGVavrcPLSDPPKTSIQCRHKMEKLRKRYRAEIQRIANTprGHRYPSSWVHFKQMDA 124
                8***********************************9975554455589*****************998887765213566789*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2031125No hitNo description
SMARTSM005951.1E-840130IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASSNSPSSS HEQTNPLAAK PPAASRRLPP PCWSHDETVA LIDAYRGKWY SLQRGNLRAP  60
HWQEVADGVA VRCPLSDPPK TSIQCRHKME KLRKRYRAEI QRIANTPRGH RYPSSWVHFK  120
QMDAMELGLS SSDPSVDPIN QEEDEVDERG DEENEDELFL YPKRIKQAVT LPLNRRYQGL  180
VGNGVTAGKR NGNGVRIRIP NIAAVTPPNT SFDDYPPPVN PHYRPGKRSR DGFVKEAFGG  240
EMNRKHGGGG GMKMRKEMEN DESHLMDGMV AAIQKLGDGF LKIEMMKMDM ARELESMRMK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772776.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A2J6KU520.0A0A2J6KU52_LACSA; Uncharacterized protein
STRINGSolyc01g088820.2.19e-75(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-45Trihelix family protein