PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 564aa    MW: 62894.4 Da    PI: 6.1874
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691251PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-5920PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.2e-19300384286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+qe+  Li+a++e++ +l++g lk+ +Weev++ + ++ g+   ++++kqC++k+e+l+kry++++   +++     + + +f+ ++
  Lsa011769 300 WTHQETANLIQAYQEKWYSLKKGPLKASQWEEVAITVaARCGYdepTKTAKQCRHKIEKLRKRYRAERGKPRSK----ATAWNFFKLMD 384
                ***********************************9965667755579*******************9999985....457*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.597299360IPR017877Myb-like domain
PfamPF138373.8E-19299386No hitNo description
SMARTSM005951.5E-6307391IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
XKEAHFRTTE SPITILSRFL LAVTTTPHLQ PSPTTVATTA AYHTPPQFTE IXPSESPDFD  60
QLHLMATDTP SPPPTASHEE EEDNINQQPP TQQELVLSPP SPIEDVDQHQ QFENSNSPYS  120
PRTSVTKSEK PIDREHPPPE DVADEQEPVP TSPPPQDKML GLQQPSPPPS PSSFLQPSPP  180
PPPPPPPLPT EPEYPPENLS PGHESPISKK SPSSPKRDEH PLQSPNYRET PYPNPNPNSD  240
HESPSPSSPA TLQGNPSPKP HKSPKDPSPS PPPTAASPSS PPLLQAVASS SPTKQQILPW  300
THQETANLIQ AYQEKWYSLK KGPLKASQWE EVAITVAARC GYDEPTKTAK QCRHKIEKLR  360
KRYRAERGKP RSKATAWNFF KLMDNLEKGP LPISSSLPSM ELVEYQKPSN SNGKKRKNND  420
DGDSEFLVNK RSRSKISSNH HISNGSDARF SDGGHDRVMR GLRTPVVHKH KGFYQEEEED  480
DSNEEDEDNE EGVAAQLAAE IKGFAEKFVK IENKKIEMIK DVERYRLEME NKRMEMILES  540
QQMLVETVNK AFGGSHKPHK LSAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759231.10.0uncharacterized protein LOC111907662
TrEMBLA0A2J6LNT80.0A0A2J6LNT8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-32Trihelix family protein