PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 515aa    MW: 58449.4 Da    PI: 7.8275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692781PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-17121211186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +Wt++e laLi+a+re++ +lrrg l+ ++W++v++ +        +  +++ qC++k+e+l++ry+++k+++ +    +  st+ yf+ ++
  Lsa011628 121 CWTQDEALALIQAYRERWYALRRGYLRTADWDAVAEEVgricPGA-VpPKTSAQCRHKMEKLRQRYRAEKQRALSFpGGQFLSTWFYFEAMD 211
                8*************************************7763333.3489**********************99985577889999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510298.872110218IPR006578MADF domain
PfamPF138371.5E-17120213No hitNo description
PROSITE profilePS500906.632122182IPR017877Myb-like domain
SMARTSM005959.1E-12129218IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSWWWGTTGW WRWRSWCSAL VGGAHHIHPR ILASPSPYRH PHHHRPPTPP GGPFLLPPNP  60
LTFPSFKPPR NSSASSTXTI ITSRHSSNDL SIVVLPLDLD SATATAVSAA EKPVRRFPPP  120
CWTQDEALAL IQAYRERWYA LRRGYLRTAD WDAVAEEVGR ICPGAVPPKT SAQCRHKMEK  180
LRQRYRAEKQ RALSFPGGQF LSTWFYFEAM DSMEKNGSGS NADEETQSGN DLNSSGMKNV  240
NSKNNHQSNA ITVSNYGGLH PGRGIRFKPV AADSNLVTIA SRSNNFRVSH NYAAQEEDND  300
NDDEVEDEYF IEPPIGKNSG KTHKPSSQNY ATRFQSDHHN NNGAHVHPSK FQVTEHSGIR  360
PRKFSKTASN SNPSYWNENG EEDDDNDDGE EEEVWVKMGK DRSSASMEYR DNKYGDRNRN  420
MNSSHHYFNG EDDFSREKKG VKRDNNNSLG EIVSSIKVLA DGFVKMEKMK MDMVHEIEKT  480
RMEAEMKRNE LLLESQKQIV EAFVKGLADN RKQQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758932.10.0uncharacterized protein DDB_G0283697
TrEMBLA0A2J6LPA90.0A0A2J6LPA9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-38Trihelix family protein