PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 390aa    MW: 43330.4 Da    PI: 9.3713
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-41251PU_refplantGDBView CDS
gnl|UG|Lsa#S32113319PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41e-14108199186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W+++ + +Liea  ++  +l+rg+l++++W+ev++ +     + ++ +r+ +qCk++++ l+k++k +k  + +  +++ +s +p+f  l+
  Lsa011316 108 CWSEEATFTLIEAWGDRFVELNRGNLRQKHWQEVADSVnarhgHVKKSRRTDIQCKNRIDTLKKKFKVEKSKMLELgADNYVSPWPFFAPLD 199
                7*************************************9766666677899****************9987665544899999*****9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-23106201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
KERSSQTRLP HQNLPTFVGG TNMSCQSDYN SDPPHAPLLK PRLSPSSPAA SPPTATPHRS  60
SDGNSTTSHQ SETAPTASMD DNETAPPLPL PPPPPPPKNT SFPVREDCWS EEATFTLIEA  120
WGDRFVELNR GNLRQKHWQE VADSVNARHG HVKKSRRTDI QCKNRIDTLK KKFKVEKSKM  180
LELGADNYVS PWPFFAPLDS LIGSSFKPST QTPTPPPPRK RIRTPPSLPA LPPPPSSVPV  240
APRSKRPAPP AFQPSNDTSF FRRNFSVMAA AAAAIDGADE DSDTSWSSGG NGARRSRLEK  300
ADETGSDAYH HLAEAIGRFA EVYERVEEAK QRQMVELEKQ RMQFTKDLEL QRMKLLMESQ  360
VQLEKLKRSK RNSEPDFSRS DEGDHSASIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024961112.10.0trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A118JSV70.0A0A118JSV7_CYNCS; Uncharacterized protein
STRINGXP_009760894.11e-100(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-43sequence-specific DNA binding transcription factors