PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010273
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 405aa    MW: 44694.3 Da    PI: 10.0435
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-20569PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.4e-1476163186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +       +  ++ +qCk++++ ++k+yk +k+   ++  +  st++++d+l+
  Lsa010273  76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYLKAPKTDIQCKNRIDTVKKKYKLEKAKIASG--GGPSTWSFYDRLD 163
                7*************************************85433445577889*********************97..67779******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2574165No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEDDEEIQSH PSAGSGSPSS PRSNRRITVT VATAAPPQNT LTLALPIQQP RTVGGGGGGG  60
GGGGGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA DIVSSREDYL  120
KAPKTDIQCK NRIDTVKKKY KLEKAKIASG GGPSTWSFYD RLDQLIGPTA TAKSGSSLLT  180
TPPLRAVPMG IPVGVRSAPV QSLRLKQQQE RQQQLLQQQQ QQQQQLQQQR KRLRPPPAYS  240
DSSESEPEAS PDSPESDSYE QKRPRVPLPF NANSNSTTRQ QQQDRGRGVG GREKNWGDSV  300
RELTRAIMKF GEAYEQAESS KLQQMVEMQK QSMKFAKELE LQRMQFFMKT QLELSQLKHS  360
RKGVGNNTTN HHHSHNHNNT HNHHNSSNHN TINSNNNNHS DDSNN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023773099.10.0trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-109ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A251RZ351e-170A0A251RZ35_HELAN; Putative sequence-specific DNA binding transcription factor
STRINGVIT_09s0002g00720.t011e-136(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-57sequence-specific DNA binding transcription factors