PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009635
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 198aa    MW: 22938.1 Da    PI: 10.1028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29958458PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-131721895
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
               +pkkf+e+hg++      ++l+ ++g +W+v l  +k++++++l++GW eF++   Lk g  ++Fk+++ s f   v 
  Lsa009635  1 MPKKFTEKHGKD--LLERVILKVPNGDVWRVDL--QKSGDEIWLKNGWWEFAEHYSLKYGHLLMFKYERFSIF--GVV 72
               59*******977..6668***************..*******************************9764555..454 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-16181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.071177IPR003340B3 DNA binding domain
PfamPF023621.6E-10169IPR003340B3 DNA binding domain
CDDcd100171.99E-12175No hitNo description
SMARTSM010190.0029277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-18277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPKKFTEKHG KDLLERVILK VPNGDVWRVD LQKSGDEIWL KNGWWEFAEH YSLKYGHLLM  60
FKYERFSIFG VVIFDTSATE IVSPPMKKDP LGNSTKEVAR NNPQEVKLTK LETVKSEEET  120
CSSSEDEKSR IKINVGGGSL RKRREDGRRA VERAKANFKS HKHFFIAYIQ QSYVTGSRGL  180
LSSGRYLLRW CWLGGIYX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A103XL033e-42A0A103XL03_CYNCS; B3 DNA binding domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein