PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 163aa    MW: 18712.1 Da    PI: 3.783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32122074PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-15999198
               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               ffk+l   d ++ + l lp  f+ +h  ++++e++  + l    g +W++k+  +k ++ y++++GW++ v++ +L  gDf+vF l ++s+f  ++++f+
  Lsa009179  9 FFKIL--LDRSAPH-LELPPGFVHKHleKKIPENP--ILLSRNGGYEWRLKI--KKEGEIYYFADGWSDVVEDSDLGFGDFLVFWLLDESTF--KLSIFS 99
               78888..8888888.99*********876666665..88889999*******..999999*************************9998998..666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-215108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9856101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-177112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-16799No hitNo description
SMARTSM010192.7E-169101IPR003340B3 DNA binding domain
PfamPF023627.2E-13998IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAPRGLPSFF KILLDRSAPH LELPPGFVHK HLEKKIPENP ILLSRNGGYE WRLKIKKEGE  60
IYYFADGWSD VVEDSDLGFG DFLVFWLLDE STFKLSIFSP NGCEKNFPLK IQDEHDDTEE  120
EEEEEEKEED NYDDDGGNGV EYEEDDDDDG GDIDGDDGDE DDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A103XSM14e-27A0A103XSM1_CYNCS; AT hook-like protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.18e-13B3 family protein