PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 454aa    MW: 49877.4 Da    PI: 8.3444
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-17686PU_refplantGDBView CDS
gnl|UG|Lsa#S58684694PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.52.4e-34712402133
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............................ssssa 70 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                               s    
  Lsa009151  71 SGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASGSIAELPSLdpsftgadghnqhhhndhnnqhqkqlsdekkS---- 166
                689*************************************************************99999888875555544444444444333331.... PP

        TCP  71 seceaesssssasnsssg..........................kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                 g                          + +ks+a+s+ s++s+ s l+l++ e r +ar+rare  ++k + k
  Lsa009151 167 ----------------TGhdaefedpnyqnhheqnnnnnnnnnvSLSKSSACSSTSETSKGSGLSLSRsENRVRARERAREMAAKKEKEK 240
                ................22333444333333333333444445566677777888888888888999988888999999999777666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-4172239IPR005333Transcription factor, TCP
PROSITE profilePS5136930.63373131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEVDEIERQV SKFQRIGSNG DNSSNPHKIA TLRGNLDLRN HEHRFPDENG GVGGRLCGWP  60
ASRIVRVSRA SGGKDRHSKV LTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL  120
IKAASGSIAE LPSLDPSFTG ADGHNQHHHN DHNNQHQKQL SDEKKSTGHD AEFEDPNYQN  180
HHEQNNNNNN NNNVSLSKSS ACSSTSETSK GSGLSLSRSE NRVRARERAR EMAAKKEKEK  240
DTDPVRASVV TQVNGIAHNS SFTDLLTGGI NSNTVSPNPA ATPESRMQWT TPMDYFFNRP  300
PQSSPQIIQM PQFNIAAVDN HPQQHHFSFL QENFAPVVTT SGGDGGGESY NLNFSIAASS  360
SGGGIAPGFN RGTLQSNLLS ILPHHHHHFQ RFQSPSMVDG STSTNFPFFI APTIGSGAPE  420
HFPATGYDSQ RRQLYGGADG GARHSDHHKE KSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2378132155Putative transcription factor PCF6
5zkt_B2e-2378132155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732997.10.0transcription factor TCP2-like
RefseqXP_023732998.10.0transcription factor TCP2-like
TrEMBLA0A2J6KHD40.0A0A2J6KHD4_LACSA; Uncharacterized protein
STRINGMigut.M00891.1.p5e-92(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.28e-41TCP family protein