PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 274aa    MW: 29172.9 Da    PI: 7.2422
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675577PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.99.3e-312862089
        TCP 20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..............k 89
               RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s+g              +
  Lsa007512  2 RRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAGhtsylrngfsfvtsQ 86
               9**************************************************9998777777777766555445555444444330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.898144IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-31299IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
XRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS  60
LRSSGSTMSA GHTSYLRNGF SFVTSQPMSQ YLNFSTSAVK QDSSSCLDLR SIPMGVASSY  120
MMQSSSGSIP ASNTQTPPPT SFLMMGNPNT NTTTTTSSHA ITGDPTWNFP SNSNHITNNN  180
TTNDDHAYRG GLGSNISNGG GLHFMNFGTP MSLFQGQQYG GGTVAPTEGH LGMLTALSPF  240
RPIFSMGASD HLLSGLNPHD RGHDHHETSS SHHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747903.10.0transcription factor TCP15-like
TrEMBLA0A2J6JJW80.0A0A2J6JJW8_LACSA; Uncharacterized protein
STRINGVIT_01s0026g02200.t015e-63(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-37TCP family protein