PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 263aa    MW: 30077.4 Da    PI: 8.1589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27442PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17154255199
                EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+kvlt sd+  + gr+v+pk++ae++  + + ++++++ + d ++++We+ ++y+ + g+  yvl+ G ++F  + +L++gD+v F++++  ++++ ++
  Lsa007455 154 FEKVLTASDADMKlGRIVIPKRYAEAFfpEVSAPKGIMMNILDMESKEWEFSFRYWPNCGSktYVLE-GLRDFMFSRKLQAGDTVSFYRVE-PGGKMAIG 251
                89******987655**************977778999******************999888878888.********************766.89989999 PP

                EE-S CS
         B3  96 vfrk 99 
                ++++
  Lsa007455 252 FRKT 255
                8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-27151259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22151255IPR015300DNA-binding pseudobarrel domain
CDDcd100175.11E-22152254No hitNo description
SMARTSM010193.7E-16154256IPR003340B3 DNA binding domain
PfamPF023622.0E-14154254IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63155256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASSSSKASC FQCQDSTSNC FRDGWRLRNG ERAHLCYQCA CVYEEGRFCE TFHSNDDGWR  60
DCESCGKLVH CGCVVSFNQY FLLDFGGVIC RECSKKNLKL ARNQRYAREF QTDPTDVPDL  120
AKRIQIEPHY WPDGIVSDIK CISKTAKPFL NPLFEKVLTA SDADMKLGRI VIPKRYAEAF  180
FPEVSAPKGI MMNILDMESK EWEFSFRYWP NCGSKTYVLE GLRDFMFSRK LQAGDTVSFY  240
RVEPGGKMAI GFRKTSVAKP AHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1515324113102DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098358.11e-109PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ6Z3U34e-39Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A068UBK41e-109A0A068UBK4_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-37HSI2-like 1