PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 460aa    MW: 51321 Da    PI: 6.677
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694687PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-14924PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-16177226155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+ +lg f+t   Aa+a+++a+ k++g
  Lsa007009 177 SQYRGVTFYRRTGRWESHIWD------CgKQLYLGGFDTSHAAARAYDRAAIKFRG 226
                78*******************......55*************************98 PP

2AP240.66.5e-13269319155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+       g    +k+++lg f+ + eAa+a+++a+ k+ g
  Lsa007009 269 SRYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEVEAARAYDKAAIKYSG 319
                79********.7******...5...334336**********99************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.47E-13177236No hitNo description
SuperFamilySSF541711.18E-15177235IPR016177DNA-binding domain
PfamPF008474.2E-9177226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-17178235IPR001471AP2/ERF domain
PROSITE profilePS5103217.767178234IPR001471AP2/ERF domain
SMARTSM003803.7E-32178240IPR001471AP2/ERF domain
CDDcd000182.32E-23269329No hitNo description
SuperFamilySSF541711.63E-16269328IPR016177DNA-binding domain
PfamPF008475.2E-8269319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15270327IPR001471AP2/ERF domain
PROSITE profilePS5103215.857270327IPR001471AP2/ERF domain
SMARTSM003802.4E-28270333IPR001471AP2/ERF domain
PRINTSPR003675.0E-6271282IPR001471AP2/ERF domain
PRINTSPR003675.0E-6309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MREGLKMFDL NVDVALSVVD TSTKCDRNGC ATNGDIAVKK KEQEDRQSGI HSGTSVSSDV  60
LNVTVDVDVD DEDSVSYTAL HKQACHIVSQ TGESMENSNR ASAGLITRQF FPVASYLELE  120
EELRSGLITS SPSTISFLGA DWLNLKVPES APVPVNVKAL PPQKVRKTRR GPPSKSSQYR  180
GVTFYRRTGR WESHIWDCGK QLYLGGFDTS HAAARAYDRA AIKFRGNDAD INFDLSDYEE  240
DMAQTKNLSK EEFIQILRRQ SNGFSRGSSR YRGVTLHKCG RWEARMGQLL GKKYVYLGLF  300
DNEVEAARAY DKAAIKYSGR EAITNFEPST YGADIIDLDQ ASGENLDLNL WISPTPTLST  360
WNGNQNVENA DMGFTAASGK RQKVGGQYQY QYQSQSQSHY SALCTPNYEE MTKGISSASV  420
VPSTAAWQRQ MQMQMQQHHQ DSLLLLQSSQ TSFYSYPTHT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740230.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_023740231.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AMA92e-94AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2J6K1E00.0A0A2J6K1E0_LACSA; Uncharacterized protein
STRINGXP_008463879.11e-107(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-87related to AP2.7