PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006119
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 263aa    MW: 27773.8 Da    PI: 10.2082
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-24375PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-39351322102
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaksaaks 97 
                a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ +  + +++nss +    +       +
  Lsa006119  35 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVAVRNSNNSSLSaaldQ-------K 127
                789******************************************************************88722222222222222222221.......1 PP

        TCP  98 kksqk 102
                ++sq+
  Lsa006119 128 SSSQH 132
                11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8924195IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-3441133IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
XIYSMSTSEG AANGVPNAGI IDTQRQQPPG NGVLAVKKPP AKDRHSKVDG RGRRIRMPII  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV AVRNSNNSSL  120
SAALDQKSSS QHHQHLISPT PFILGKRLRS EEDGLDGGGK EDNMSSATVV SAAAGGGFWA  180
LPARPDFGQV WSFAAAPQEM VVSSPTALAS QQGRFIHNQQ PMGEASAARV GNYLPMTQGH  240
LNLLASLSGP PPQSSGRKDD DTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736444.10.0transcription factor TCP7-like
SwissprotQ9FMX26e-89TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2J6K9I80.0A0A2J6K9I8_LACSA; Uncharacterized protein
STRINGVIT_10s0042g00170.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-65TCP family protein