PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 560aa    MW: 61840.2 Da    PI: 6.7586
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-43031PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15265324155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Lsa005836 265 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 324
                78*******************655454478446*************************98 PP

2AP244.44.1e-14367418155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t e+Aa+a++ a+ k++g
  Lsa005836 367 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEDAAEAYDVAAIKFRG 418
                57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.08E-22265333No hitNo description
SuperFamilySSF541711.24E-16265334IPR016177DNA-binding domain
PfamPF008471.6E-12265324IPR001471AP2/ERF domain
SMARTSM003803.5E-29266338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-16266333IPR001471AP2/ERF domain
PROSITE profilePS5103219.137266332IPR001471AP2/ERF domain
PRINTSPR003672.1E-6267278IPR001471AP2/ERF domain
CDDcd000185.09E-25367428No hitNo description
SuperFamilySSF541711.05E-17367428IPR016177DNA-binding domain
PfamPF008473.3E-9367418IPR001471AP2/ERF domain
PROSITE profilePS5103218.953368426IPR001471AP2/ERF domain
SMARTSM003801.3E-34368432IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18368427IPR001471AP2/ERF domain
PRINTSPR003672.1E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MKSNDNNNGN NKNSDNWLGF SLSPHSSVAT HSSPSNESNT TSFFTFPSHF NYQNLYCGGV  60
EGVNGGGIYS TFPIMPLKSD GSLCLMDTIT RSQSQGMVAS TTPKLENFFG GVTMGTTDLD  120
TDAMYYNHEN GTQNYQIQPQ HYQDYNGLYQ TIQLQEAKES QIASGSSCGL YLPTIGEGWV  180
STDYHSGSGG GGGGGGGGLQ SLSLSMSPGC SQSSSCVTIS QQQMTPANVT ESVVMETKKR  240
GSEKVDQQKQ IVHRKSLDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV  300
YLGGYDMEEK AARAYDLAAL KYWGSSTHIN FPVENYEQEL EEMKNMSRQE YVAHLRRRSS  360
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEDAAEAYD VAAIKFRGVN  420
AVTNFDVSRY NVERIMESNT LLSGELARRT KAREPMTEVV ANEAHNGEHK TLSNDVTSDG  480
SMLEWKTEVY EQNSGGGVEG DESSTIKNNG DSGEECMKRN KNLPMVLGMP PAMNTWIPTV  540
AATTTQLRSH MPIFAAWADA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762286.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-157ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2J6LH580.0A0A2J6LH58_LACSA; Uncharacterized protein
STRINGEOX917610.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-139AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]