PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004945
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 544aa    MW: 58924.6 Da    PI: 7.3154
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692146PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-2926PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.81.4e-321342653106
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 
                + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai+++tgt++++a+++  ++s +s++s+ s++             
  Lsa004945 134 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAETAIIAATGTGTIPANFStLNVSLRSTGSTLSAPpsksaphqfhgal 233
                5699****************************************************************99987888888888555556666778887777 PP

        TCP  89 ................kaaksaa.kskksqksaas 106
                                    +++ +++++q+++++
  Lsa004945 234 alahhpfdqegfsqmmG---FHQhHHQQQQQQHHH 265
                77777777655543221...111111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-40138269IPR005333Transcription factor, TCP
PROSITE profilePS5136928.008139193IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MERTDLQSNN KQSSTTTPTS NTSSSHHHHH HHLSHHLHHQ PMVVPFDARS VTPFMGSISI  60
QPGPANTPTT TSGASSSLSS PSNQHPTTAS TSSATQLSPP HPHLVDASLA IATRSEALTD  120
LAKENPQPVA VVPPPKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE  180
WLLQQAETAI IAATGTGTIP ANFSTLNVSL RSTGSTLSAP PSKSAPHQFH GALALAHHPF  240
DQEGFSQMMG FHQHHHQQQQ QQHHHHQNPH ILTADQIADA ISTGGNGGTG GDSTDNYMRK  300
RYREDLFKDE SNQNQGEVTV GSTSPSNKQF KGAMEMPKQQ QEAGGPSSGN NILRHHANMM  360
PATAMWAVAP APTTATGNTL WMLPVSTSVS SSSGQHSHLA GAASESQHHH HQQMWPFPTA  420
QAVGGGNTLQ APLHFIPRIN IPAANLEFQQ NSRANPLQLG SMLMQQQQQQ QQQQQQQPSQ  480
HLGLGMSESN LGMLAALNAY SRGGLNMNSD QNHPLDHHHH PNQNQNQHHS QTTDSGDEDQ  540
NDST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730292.10.0transcription factor TCP8-like
RefseqXP_023730293.10.0transcription factor TCP8-like
TrEMBLA0A2J6KNN10.0A0A2J6KNN1_LACSA; Uncharacterized protein
STRINGEOX971601e-156(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-70TCP family protein