PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 355aa    MW: 39433.5 Da    PI: 10.0732
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687692PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.6e-1647130186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  v  L+ea++ ++   +r+klk+++We+v+k++     + +  ++++qCk+k+e+++kry+ + +++        s++p+f +l+
  Lsa004643  47 EWSEGAVSSLLEAYEAKWVLRNRAKLKGHDWEDVAKYVssraNSSKSPKTQTQCKNKIESMKKRYRSESATSDV------SSWPLFPRLD 130
                5*************************************87777777888999**************99988874......57****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-1945130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDNNKPNKQE TPSPFTNKDH DSSPRKPPLP SASVAGGSGG DRLKRDEWSE GAVSSLLEAY  60
EAKWVLRNRA KLKGHDWEDV AKYVSSRANS SKSPKTQTQC KNKIESMKKR YRSESATSDV  120
SSWPLFPRLD LLLRGSGGPP VVTSGGDPPS SSTPVANKLP LMVFEHTPPP PPPPMIQSSS  180
PPVTLPVPLP VATPAHQVIG QNSIDSNGLD RENKEDDVVG IKTSEKEINQ VSEKMEIETD  240
CSTPALYSNE KGKIQTKNQN HKNTNNRKRR RKGERESWDV AESIRWLAKV MVRSEQAKVE  300
TMRELEKMRA DAEVKRGEID LKRTEIIAHT QLEIARLFAT SFGKTVDPSL RIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266270RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732875.10.0trihelix transcription factor ASIL2
TrEMBLA0A2J6KHG00.0A0A2J6KHG0_LACSA; Uncharacterized protein
STRINGXP_002513038.11e-112(Ricinus communis)
STRINGXP_004307092.11e-112(Fragaria vesca)