PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 207aa    MW: 22600.1 Da    PI: 8.3302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58667585PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-2459160199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ l+
  Lsa004307  59 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGKLWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGDLC 154
                89****************************986555555..8999*********************************************3..478888* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  Lsa004307 155 VGIRRA 160
                ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-3851162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-3152183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2358159No hitNo description
PfamPF023629.4E-2359160IPR003340B3 DNA binding domain
SMARTSM010196.3E-2259161IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28159161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
XILCGVSTVK FMADSDTDEV YAKIGLVPLG NHSDCDFEND GFLGFDHIKN ENQEKPASFA  60
KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTIL AKDVHGKLWK FRHIYRGTPR  120
RHLLTTGWSN FVNQKKLVAG DSIVFLRADN GDLCVGIRRA KRGIGRGFHD SNSSGWNTSI  180
PGYGNSGKVS AESVIEAANL AATGRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-482162106261Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602629.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_009602628.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_016457948.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_016445001.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_016445000.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_009784519.11e-101PREDICTED: auxin response factor 16-like
RefseqXP_009784518.11e-101PREDICTED: auxin response factor 16-like
SwissprotQ93YR99e-90ARFP_ARATH; Auxin response factor 16
TrEMBLA0A118K5V91e-136A0A118K5V9_CYNCS; Auxin response factor
STRINGPOPTR_0010s23000.16e-98(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.13e-82auxin response factor 16