PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 390aa    MW: 43305.4 Da    PI: 6.1427
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686984PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.65.9e-2787181186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rWt+qe l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + + ++l+
  Lsa003726  87 RWTRQELLVLIQGKRVAENRVRRGRsavlafgsaQVEPKWSSVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKDEAESFWLMRNDLR 181
                8**********************866777777779*********************************************999999999888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-1187176No hitNo description
PROSITE profilePS500906.56287153IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-587152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
KNKDAIDIGM XIKDPSLLQT PNGRTPPTIT IYSFITKTPL PGNRLPVKSR ALLHFMALER  60
LTLAPVVLDT GTGNGGEDLN KAPRLPRWTR QELLVLIQGK RVAENRVRRG RSAVLAFGSA  120
QVEPKWSSVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK EWESQIKDEA ESFWLMRNDL  180
RRERKLPGFF DREVYDILDG GGPSSAEAEA EGDKSLVLSL APSAAETENE VLFDSGRTAA  240
AVDDGLFSDE VIGSPEKAPT PISATQYEPF SQEVPEHDHH HPVPTAAADK KSSPINPDEA  300
ADGTAHQGSS RKRKRPAIDA DEDEDEEEEM SLQKQLIEAM ERNGRLLSSQ LEIQNTNSQL  360
DRDQRKDHAN TLFAVLNKLA DAMVRIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771802.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-108ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2J6KW470.0A0A2J6KW47_LACSA; Uncharacterized protein
STRINGVIT_01s0150g00050.t011e-131(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-109Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]