PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 234aa    MW: 26904.7 Da    PI: 9.0113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683201PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-37248PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14132220197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                f+k +++s+++   +l lp +f+++    ++++ t+tl de+g+++   +    ++g+  l++GW++F   ++L +gD +vF++++ + f  +v ++
  Lsa003643 132 FVKPMLQSHTTGGFWLGLPTHFCRKSL--PRTDCTVTLIDEEGEEFPTVY--LAHKGG--LSGGWRGFSIHHQLVDGDALVFHRIQPTVF--KVYII 220
                89*********************8884..345669***************..777777..9**********************8876666..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-23126222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-18126221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-24130221No hitNo description
PROSITE profilePS5086310.588132223IPR003340B3 DNA binding domain
PfamPF023621.7E-12132221IPR003340B3 DNA binding domain
SMARTSM010192.0E-18132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVVSKKNYED LRKQRLEENK KRMEELHLPQ LTQALKTAHS PTPSPMKRTK PRVIGTEMVE  60
VRRSSRVAHL PAPVYKEIVV YERVELPRSG RRYSYSRRDL GNRVYASDEA RDYAINKAEE  120
LEAKLEGGHP SFVKPMLQSH TTGGFWLGLP THFCRKSLPR TDCTVTLIDE EGEEFPTVYL  180
AHKGGLSGGW RGFSIHHQLV DGDALVFHRI QPTVFKVYII RCKDYDEEGE NLEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783454.11e-101PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_016434462.11e-101PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ69V361e-78Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A103XWT51e-108A0A103XWT5_CYNCS; B3 DNA binding domain-containing protein
STRINGSolyc04g079130.2.16e-97(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-73B3 family protein