PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 183aa    MW: 19902.3 Da    PI: 10.1464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32107314PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.11e-3327854129
        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ +++lvg+kktLvfy+grapkgek++Wvmheyrle
  Lsa003641   2 GEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTSALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 78 
                579*************************************9856778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.8141102IPR003441NAC domain
SuperFamilySSF1019413.14E-382102IPR003441NAC domain
PfamPF023655.6E-16677IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGEKEWYFFS LRDRKYPTGL RTNRATEAGY WKATGKDREI YSSKTSALVG MKKTLVFYRG  60
RAPKGEKSNW VMHEYRLEGK FAYHFLSKSS KDEWVISRVF KKSGVGSVGG AGSGSGSGSV  120
GVGKKWFSGG INIGKEASSS SAVSGSLPPL LDSSTYVPGE QESFSYDSNA ASKEHVPCFS  180
TAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-31110368166NO APICAL MERISTEM PROTEIN
1ut4_B4e-31110368166NO APICAL MERISTEM PROTEIN
1ut7_A4e-31110368166NO APICAL MERISTEM PROTEIN
1ut7_B4e-31110368166NO APICAL MERISTEM PROTEIN
4dul_A4e-31110368166NAC domain-containing protein 19
4dul_B4e-31110368166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615029.11e-84PREDICTED: protein CUP-SHAPED COTYLEDON 2
SwissprotO040175e-70NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A103YJZ75e-90A0A103YJZ7_CYNCS; No apical meristem (NAM) protein
STRINGPGSC0003DMT4000322809e-84(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.14e-66NAC family protein