PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003627
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 243aa    MW: 27907.8 Da    PI: 5.5871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675387PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.36.3e-36521711128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv++L++k++  + +  ++i+++d+y ++PwdL+ k+  e k+wy++s+r         +nr+t++gyWka   d++++s+ +++ 
  Lsa003627  52 LPPGFRFCPTDEELVVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLDGKAMVEGKKWYYYSRRT--------QNRITTNGYWKAWDCDEQIISSsSSKR 142
                79*************************998.89**************977777899******984........589999************999867788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk  vf+ g+ap+g+kt+W+m+e+rl
  Lsa003627 143 VGVKKYYVFHIGEAPEGVKTNWIMQEFRL 171
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-4748207IPR003441NAC domain
PROSITE profilePS5100544.58752209IPR003441NAC domain
PfamPF023656.1E-2153171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XSRLHYSIFQ PHNIINNFNS LILISLILNN PSTYPLIGLR FSLMGDSNNV NLPPGFRFCP  60
TDEELVVHFL QRKASLLPYH PDIIPDLDLY PYDPWDLDGK AMVEGKKWYY YSRRTQNRIT  120
TNGYWKAWDC DEQIISSSSS KRVGVKKYYV FHIGEAPEGV KTNWIMQEFR LSDASNSSGS  180
SSSSSGRSKR KGHSKVDSSK WVICRVFDHS YDSDDDNENG TELSCLDEVF LSLDDFDDIS  240
YPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-414820713163NO APICAL MERISTEM PROTEIN
1ut4_B4e-414820713163NO APICAL MERISTEM PROTEIN
1ut7_A4e-414820713163NO APICAL MERISTEM PROTEIN
1ut7_B4e-414820713163NO APICAL MERISTEM PROTEIN
3swm_A4e-414821016169NAC domain-containing protein 19
3swm_B4e-414821016169NAC domain-containing protein 19
3swm_C4e-414821016169NAC domain-containing protein 19
3swm_D4e-414821016169NAC domain-containing protein 19
3swp_A4e-414821016169NAC domain-containing protein 19
3swp_B4e-414821016169NAC domain-containing protein 19
3swp_C4e-414821016169NAC domain-containing protein 19
3swp_D4e-414821016169NAC domain-containing protein 19
4dul_A4e-414820713163NAC domain-containing protein 19
4dul_B4e-414820713163NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531051.12e-91PREDICTED: NAC domain-containing protein 18-like
SwissprotQ8GWK61e-77NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A124SCD51e-115A0A124SCD5_CYNCS; No apical meristem (NAM) protein
STRINGGLYMA08G08010.15e-91(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-54xylem NAC domain 1