PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003619
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 503aa    MW: 55170.3 Da    PI: 6.717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691376PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-30125227197
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g   + +l++
  Lsa003619 125 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSTNDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGGsAKDRLFI 224
                89***************************9555568889************************************************5434446666776 PP

                EEE CS
         B3  95 kvf 97 
                 ++
  Lsa003619 225 DWR 227
                666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-42120236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30122229IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-27123212No hitNo description
PROSITE profilePS5086314.254125230IPR003340B3 DNA binding domain
SMARTSM010195.5E-22125230IPR003340B3 DNA binding domain
PfamPF023624.7E-28125228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
XGGGGGGGNL FEEEDEEERQ NTAPAGQLFP SSSSSSPSSS HHQHQHQHQP PPSFLHQPPY  60
HHQNQRGGWV FDGTSSRPSD PMVMDYSSVA QPAPDNINDD DQQSSHQAAA GGGGMMMVVE  120
REHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDSSTNDK GLLLNFEDRN GKPWRFRYSY  180
WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF QRGVGGSAKD RLFIDWRHRP DAQAPPYQLS  240
SNLSFPLPHH QFSFHNRNTA GVSWNPLFFQ SQPAPPRSHS NLMLQPPNSY AAPPNSYRYG  300
SSGGSPYHNI GTGSVVNVNQ GGSGSSVIYF RSGAGGIPHQ QHADMMQMQQ RSGVGVGVGI  360
GIDPPALPGP APGVVFESVP VVHGKAAAKR LRLFGVNMDC PISDDDEQDY DQLPGELISP  420
TTNSIPMGHY NHGDYHHEHY PTHHNPPPPP SSSSSTIPYL QLRPNYGEET QFHQTTMVSS  480
SSVDAFNKST KSSSSHMSLD LDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4412223511127DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081336.11e-103PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A103XJB01e-133A0A103XJB0_CYNCS; B3 DNA binding domain-containing protein
STRINGPGSC0003DMT4000318636e-98(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-66B3 family protein