PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003459
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family AP2
Protein Properties Length: 446aa    MW: 49338.4 Da    PI: 6.1565
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-20467PU_refplantGDBView CDS
gnl|UG|Lsa#S32101562PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1784143155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Lsa003459  84 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 143
                57*******************766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-1784152IPR016177DNA-binding domain
PfamPF008476.9E-1384143IPR001471AP2/ERF domain
PROSITE profilePS5103220.12685151IPR001471AP2/ERF domain
SMARTSM003801.9E-2585157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1585152IPR001471AP2/ERF domain
PRINTSPR003674.6E-58697IPR001471AP2/ERF domain
PRINTSPR003674.6E-5133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MATASSSDPV MKSEGSASGG ETSEAASTIG MAAAAAALVG KGNNYQQQLM VKYRGIKKSK  60
KDRGCTAKER ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY  120
LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREDY LASLRRKGSG  180
FSRGTSKCRG ISRWDSPLGR ISGADYNNCM HHGDDATTES EYVGGFCMDR KIDLTPYIKW  240
WGPNKSQQHE KSSDETNHAT GSSEDIGSEL KPPEWATQPT QPYQLPRLGV SHESKQHKKS  300
SVSAMSILSR SAAYKSLQEK ALKKEEENDE NENKNNINKI DYGKAAVEKK SSHDNDNDND  360
NDNDDDGTTS EFGLGMEGEE GMAALHPALA PFLTNYNAID PLGDPVLWSS LVPPLQTRSS  420
QPIEHATKTE TSSDYSFFQE EDLLPT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731666.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-137AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2J6KKJ60.0A0A2J6KKJ6_LACSA; Uncharacterized protein
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-122AP2 family protein