PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 366aa    MW: 38694.1 Da    PI: 6.1789
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685317PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.6e-3591178494
        TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg...kaaks 93 
                 ++ ++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++                     +   ++a+s
  Lsa000616  91 PRRANKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVnvngtlkI-------------PttpSNAAS 177
                57889*********************************************************8888844421111111.............111122222 PP

        TCP  94 a 94 
                +
  Lsa000616 178 D 178
                2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-2994166IPR005333Transcription factor, TCP
PROSITE profilePS5136927.62195149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MALIDNRSVV ESEDEEEDGG NTAKILSASD PLLGDPAVYT ITAVPHRHDS QPPIEVNLMK  60
EEPPENDLDG SLPVAIVPMP TSNKQITVAT PRRANKDRHT KVEGRGRRIR MPAACAARIF  120
QLTRELGHKS DGETIRWLLE HAEPAIIEAT GTGTVPAIAV NVNGTLKIPT TPSNAASDGE  180
GGGKRRKRAC NSEFYDVNDS ASSNFAPVAP IAPQSLVPVW TMGAAPPTGG IHGGAFFMFP  240
QSGATAIGPS SANQTQFWAI PAGATPVFNV AARPISSYVS AIQPGEHSGG GEIQTPSRSV  300
SYNSRNENKS GKVSTTMAPS SSSVSTTTTT AQMLRDFSLE IYDKRELQFM AGSSSTDEKP  360
SSKPSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753343.10.0transcription factor TCP19-like
SwissprotQ9LT897e-71TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A2J6M1A70.0A0A2J6M1A7_LACSA; Uncharacterized protein
STRINGXP_009623553.11e-108(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-72TCP family protein