PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 372aa    MW: 42112.7 Da    PI: 10.0897
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688220PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-9103PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.3e-1717108187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqlea 87 
                +Wt++e l+Liea+re++ +l r+ l+ p+W++v++k+     +    +++ qC++k+e+l++r++++k++++  + ++  s++ yf+ +ea
  Lsa000578  17 CWTRDEALVLIEAYRERWYALHRAFLRTPDWDAVAEKVttscPDVTPPKTSAQCRHKMEKLRQRHRAEKQRASAFSgERFFSSWFYFEAMEA 108
                8*************************************8877778889999*********************99854778899******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1516109No hitNo description
PROSITE profilePS500906.6671878IPR017877Myb-like domain
CDDcd001670.004291877No hitNo description
SMARTSM005952.7E-825114IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSATAGEKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRTPDWDAV AEKVTTSCPD  60
VTPPKTSAQC RHKMEKLRQR HRAEKQRASA FSGERFFSSW FYFEAMEAME NGYDTEPGNL  120
QIDSEIHNPK SLNPGRGLRF KPSAVQNLVT LATSSTKHNM KSSPNFGPKV SNRYSLYPNN  180
GSNQEDEDED GGLVETPIEE TIYKGHKFLV ETPIREAKNH KNSAIGGGTR NKPPITPQPE  240
SGRSGLRPRK FSKVVVHDDE DANNGGMWVK VPRNTNMFRG RSQNANGKES NKGKKNKGGL  300
SEVVSSIKLL GDGFLKMEKM KIDMAREMEK MRMESEMKRN ELILESQKQI VDAFVKGVIE  360
SRKQQPTTMA HL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762954.10.0uncharacterized protein LOC111911405
TrEMBLA0A2J6LFN80.0A0A2J6LFN8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.18e-38Trihelix family protein