PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family SBP
Protein Properties Length: 371aa    MW: 41514.1 Da    PI: 8.7928
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685349PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.4e-40125202178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +CqvegC+ dls+akeyhr+h+vCe hsk+ +v+vsgle+rfCqqCsrfh lsefD +krsCrrrL++hn rrrk+q+
  Lsa000220 125 RCQVEGCNLDLSSAKEYHRKHRVCENHSKSLKVVVSGLERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNTRRRKPQQ 202
                6**************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-34119187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.146123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.98E-38124203IPR004333Transcription factor, SBP-box
PfamPF031104.6E-32126199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEWNTKWDWE SLDISSPKKL QSTDWGIKEG EDIDGCFSLS DIGNKSSAKS SISESSLKEV  60
VIKGSNLSFP NASVCSSDQS IGLKLGKRTY FENNLPGGNN TKTSSSSNTP VKKVKFSSQN  120
TPIPRCQVEG CNLDLSSAKE YHRKHRVCEN HSKSLKVVVS GLERRFCQQC SRFHGLSEFD  180
GKKRSCRRRL SDHNTRRRKP QQSRNLSSSF YEGGEELSFV FNNQNRHGGH NRVTHSLGTQ  240
FPNDVSNSMP TLAFNRMMSS KGISAGVFDQ GSDAGHDIRR ALSLLSNDSW DSCEVDFGGL  300
NQPMHRNGPT MAQHGVHVAH HGLPFSSPEY RWQVDHQSVV PHTHFEESHL LKAPYSSIQY  360
GNPMDEILKP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27117199284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181198KKRSCRRRLSDHNTRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770711.10.0squamosa promoter-binding-like protein 12
SwissprotA2YGR52e-61SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A2J6KYJ70.0A0A2J6KYJ7_LACSA; Uncharacterized protein
STRINGVIT_01s0010g03710.t017e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-49squamosa promoter binding protein-like 2