PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 431aa    MW: 47015 Da    PI: 4.4098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05325123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg +F  +s+L+ H r +
  LPERR12G14110.1  3 FECQICGDPFDKRSDLNEHERIC 25
                     89******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.928331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAFECQICGD PFDKRSDLNE HERICSIKDN PVEVECIYCQ ELIKNNYSRK QHELQCKKNL  60
HRQTEPSGSA QGGTDLFSGI HITRQKRTAR IELLPEQRVK KPASDYAQGV IDDAPGNPQK  120
PTTSEVKADP SVNVPGDRDP SVMQRQKEKL GDSSDHKTQT DSFSPIDDLS DIATNSEKQI  180
KTIDGGVDTR LPENRHPSTM QTQSKLPDLN LLPHNDSFCS MDDNALVRAD TDSDKEKNTD  240
NDGVLADTNS DKDITGNGGV PADKNSNEQK KTDNGGVPAD TNSDKEKKTD NGGVPADTNS  300
DKEKTDNGGA DINNPQHKDP SVMEVQNKLD LNLPPRNDSF SSMDNLKTLS PIDTNSDKET  360
NTINACVDTN SDKETNTVDT GVDANSDKET NTVNAGVDIN DPDDQDPPAK PMGNKLGLNL  420
LPRSDSSDSS V
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619352.19e-55uncharacterized protein LOC4352629
RefseqXP_015619353.19e-55uncharacterized protein LOC4352629
TrEMBLA0A0D9Y0U00.0A0A0D9Y0U0_9ORYZ; Uncharacterized protein
STRINGLPERR12G14110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229