PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G12950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 149aa    MW: 16459.4 Da    PI: 7.4226
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G12950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.4e-142989363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N + + +   +  ++a++++e+
  LPERR12G12950.1 29 DNRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARTADIAGQYARVEQEN 89
                     568*****************************************99999999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-112274No hitNo description
SMARTSM003382.4E-162791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1282992IPR004827Basic-leucine zipper domain
PfamPF001704.7E-113089IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.31E-103180No hitNo description
CDDcd147023.67E-153283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSTSSLSPAG SSDGGLSPSP SPSSPAAADN RREKRRLSNR ESARRSRLRK QQHLDELVQE  60
VARLQADNAR VAARTADIAG QYARVEQENT VLRARAAELG DRLRSVNEVL RVVEEFSGVA  120
MDIQEECPVD DPLLRPWQIP CPAAHMLQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349RRSRLRK
24350RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G12950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1852801e-154AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds.
GenBankAL9350721e-154AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-154AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-154CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808697.15e-77ocs element-binding factor 1
SwissprotP240685e-75OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A0D9Y0C81e-102A0A0D9Y0C8_9ORYZ; Uncharacterized protein
STRINGLPERR12G12950.11e-103(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-35basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]