PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G05920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 392aa    MW: 42028 Da    PI: 7.0896
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G05920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.36.3e-22226288163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  LPERR12G05920.1 226 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 288
                      89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-6132IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-3676200No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-17220284No hitNo description
PfamPF001701.5E-20226288IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21226290IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162228291IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11229285No hitNo description
CDDcd147022.18E-23231282No hitNo description
PROSITE patternPS000360233248IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MWGAQPMIPP YGTPPPPYVM YPPGVYVHPS MPPGAHPFTP YAMTSPNGNA DPTGTTTAAV  60
TAGGAETDGK SSEGKEKSPI KRSKGSLGSL NMITGKNSTE HGKTSGASAN GAISQSGESV  120
SESSSEGSEN SQNDSHHKDS GQEQDGEVRS SQNGVSRSPS QAKLTQTMAI MPMPSSGPVP  180
APTTNLNIGM DYWANTASST PAMHGKATPA AAPGSLVPGE QWVQDERELK RQRRKQSNRE  240
SARRSRLRKQ AECEELAQRA EVLKQENASL RDEVNRIRKE YDELLSKNSS RNLETNNTKL  300
MRQELTISCN ILEGSSGLQA LNFSYKMSCE IIGCRDGLVT EPMLGDVSED VSKDWFATEA  360
GAVDSILSLG IRKVVLCGIF SCTILMSMTK VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242248RRSRLRK
2242249RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G05920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619717.11e-162bZIP transcription factor 68 isoform X1
RefseqXP_015619718.11e-162bZIP transcription factor 68 isoform X2
SwissprotB6E1071e-154BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A0D9XY050.0A0A0D9XY05_9ORYZ; Uncharacterized protein
STRINGLPERR12G05920.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-72basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]