PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G16970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 257aa    MW: 28613.3 Da    PI: 5.391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G16970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-111822221055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  LPERR11G16970.1 182 KRRRERINERLRALQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 222
                      9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-14169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-12181226No hitNo description
PfamPF000101.4E-8182222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDAKCATIWS SDDARNEESE MIAHLKSMFW STDADVNFCS PDISVNSCIT TSTIPSSLFL  60
PLMDNEGFGT VPLMVSTGMD MCSGHQQHEV ITGKKRILSM DEQQQQQKPK KKTRIARSVS  120
STLSPNTTEY ETSPELVNSS CSSGCSFGED SICTTDESVL KQNGNSRAQK KTSKDPQSLY  180
AKRRRERINE RLRALQQLIP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDTWMFAPLA  240
YNGMSMGLGH TLADNQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G16970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1183462e-90AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence.
GenBankAP0149672e-90AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697725.11e-129PREDICTED: transcription factor bHLH139-like
TrEMBLA0A0D9XUG60.0A0A0D9XUG6_9ORYZ; Uncharacterized protein
STRINGLPERR11G16970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-38root hair defective 6-like 4