PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G14620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 71aa    MW: 8263.09 Da    PI: 6.7796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G14620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214367123
                     EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCg..ksFsrksnLkrHirtH 23
                     ++C++Cg  ksF  +  L+ H+r+H
  LPERR11G14620.1 43 HRCSNCGsgKSFWLRQALRGHMRRH 67
                     79**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-44067IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGLNDFDREM VGDADFRKPR TSNNSDEEMQ FDDLSDAVKD RGHRCSNCGS GKSFWLRQAL  60
RGHMRRHYVP D
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G14620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664675.12e-18PREDICTED: zinc finger protein 595-like
TrEMBLA0A0D9XTK51e-45A0A0D9XTK5_9ORYZ; Uncharacterized protein
STRINGLPERR11G14620.12e-46(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229