PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 400aa    MW: 42295.8 Da    PI: 8.8816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.3e-06165188123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+dC+++F  +++L+ H +t H
  LPERR11G03780.1 165 FSCSDCDEVFVKPDSLELHRSTrH 188
                      89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.473165193IPR007087Zinc finger, C2H2
PROSITE patternPS000280167188IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-17190399No hitNo description
Gene3DG3DSA:3.90.228.105.9E-9192398IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGFYSSSSCK NRSQPMAAAA EGKNGGKKKK SSISRSITCA GSICSTKESS VSSRGRERRR  60
RSSSSSSITG GGGGGSTSSR SLMPPDHGDS AAAVSASSSF NSVMTSATSS STATTATSPP  120
SAMSSPLSSI GGSFRAMQIR KLSGCYVQCH SVLDPRSLAA AFAVFSCSDC DEVFVKPDSL  180
ELHRSTRHAV SELGADDTSR NIVEIIFQSS WLKKNGPVCK IDRILKVHSS DKIIKKFEQY  240
KELVKEKASS DDQVKKNPRC VADGNELLRF HCTTFSCSLG LAGGTALCSG STSSSSHCKL  300
CAIIKDGFRV DGNGRIATMA TSGRAHDMAE VLSDGEKRAM LVCRVVAGRV KKVISNSSSQ  360
ELDCDSVSPC SEGIYSDLDE LFVFSPRAIL PCFVVIYSGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662766.10.0PREDICTED: uncharacterized protein LOC102705571
TrEMBLA0A0D9XPH50.0A0A0D9XPH5_9ORYZ; Uncharacterized protein
STRINGLPERR11G03780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-81C2H2-like zinc finger protein