PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 699aa    MW: 75827.4 Da    PI: 5.6619
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.8e-12549595450
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                       k++r+   NReA r++Rq+Kka +++Lee+vk+L a N++L k+l+
  LPERR11G02130.1 549 PKKTRKPLGNREAVRKYRQKKKAHTAHLEEEVKKLHAINQQLVKKLQ 595
                      5999***************************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3302.2E-2375183IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.09E-36104269IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.285107183IPR000504RNA recognition motif domain
SMARTSM003601.6E-22108179IPR000504RNA recognition motif domain
PfamPF000761.1E-16109177IPR000504RNA recognition motif domain
CDDcd005902.41E-20109179No hitNo description
Gene3DG3DSA:3.30.70.3308.6E-17184264IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010212.219185266IPR000504RNA recognition motif domain
SMARTSM003602.6E-14186262IPR000504RNA recognition motif domain
PfamPF000761.1E-11187251IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.8E-22265363IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549287.93E-22270357IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.613278355IPR000504RNA recognition motif domain
SMARTSM003604.8E-18279351IPR000504RNA recognition motif domain
PfamPF000767.2E-16280348IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1709.2E-15545614No hitNo description
PfamPF077166.0E-13546603IPR004827Basic-leucine zipper domain
SMARTSM003382.1E-12546613IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.094548595IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-8550596No hitNo description
CDDcd146862.70E-11551604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MPRRTDDAAS ANSIEPAKSE EHLEFDDDEE EVEEEEIEYE EIEEEVEEEE EVEEDDDVME  60
EVEEVDDEEE EESDENEDES NTKGAHQKDD TEKEKHAELL ALPPHGSEVY VGGISSDVSS  120
EDLKRLCEPV GEVVEVRMMR GKDDSRGYAF VAFRTRGLAL KAVKELNNAK LKGKRIRVSS  180
SQAKNKLFIG NVPNSWTEDD FRKAVEEVGP GVVKADLMKV SSSNRNRGYG FVEFYNHACA  240
EYARQKMSSP TFKLDSNAPT VSWADPKNND STSTSQVKSV YVKNLPKNVT QAQLKKLFEH  300
HGEITKVVLP PSRGGHDNRY GFVHFKDRSM AMRALQNTER YELDGQVLDC SLAKPPAADK  360
KDEKVSLPTT TGAPLLPSYP PLGYGIMSTP SAYGAVTTST AQPMLYAPGA PPGAAMVPML  420
LPDGRLVYVV QQPGGQLPLA SPPPQQVGRH SGSFSGRHHG DSGSGGRHGG GSGGSGSSRP  480
ASSIRHRMIA STNLNRGRCL CCACAASRRT VCSGEPPIGR RRRTPATPLS GGPGSSSDDD  540
SCGGNKDEPK KTRKPLGNRE AVRKYRQKKK AHTAHLEEEV KKLHAINQQL VKKLQGQAAL  600
EAEVMRLRTL LVDVRAKIDG ALGSYPFQSQ CGDANVSSCD GMSQCFAGKP GLGVNQNCAP  660
SVVNCHISPD SGQNLVVPHA LSPSDAVGSF MVSSNARAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6r5k_D2e-1410936744402Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_F2e-1410936744402Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_H2e-1410936744402Polyadenylate-binding protein, cytoplasmic and nuclear
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464470GGRHGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slighty induced upon pathogen infection (e.g. P.syringae) (PubMed:24914891). Rapidly recruited to chromatin upon methyl jasmonate treatment (MeJA) to mediate transcriptional gene activation (PubMed:27495811). {ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687000.0AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence.
GenBankAK0694930.0AK069493.1 Oryza sativa Japonica Group cDNA clone:J023024M07, full insert sequence.
GenBankAY2245810.0AY224581.1 Oryza sativa (japonica cultivar-group) isolate 30848 putative RNA-binding protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619732.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619733.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619734.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_025877774.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
SwissprotQ9ASP61e-132HNRPQ_ARATH; Heterogeneous nuclear ribonucleoprotein Q
TrEMBLA0A0D9XNX00.0A0A0D9XNX0_9ORYZ; Uncharacterized protein
STRINGLPERR11G02130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.14e-30bZIP family protein
Publications ? help Back to Top
  1. Peal L,Jambunathan N,Mahalingam R
    Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
    Mol. Cells, 2011. 31(1): p. 55-64
    [PMID:21120628]
  2. Le Roux C, et al.
    The hnRNP-Q protein LIF2 participates in the plant immune response.
    PLoS ONE, 2014. 9(6): p. e99343
    [PMID:24914891]
  3. Molitor AM, et al.
    The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.
    Plant Cell, 2016. 28(9): p. 2197-2211
    [PMID:27495811]