PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G07370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 433aa    MW: 47505.2 Da    PI: 7.9687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G07370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-0582104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  LPERR10G07370.1  82 FICEVCNKGFQRDQNLQLHRRGH 104
                      89*******************88 PP

2zf-C2H212.10.0006176198123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk++   s+ k H +++
  LPERR10G07370.1 176 WRCERCGKRYAVCSDWKAHVKNC 198
                      58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-881104No hitNo description
SMARTSM003550.02682104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86682104IPR007087Zinc finger, C2H2
PfamPF121716.0E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035581141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-4164196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-8171196No hitNo description
SMARTSM00355250176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLLSDLSSDQ ESNSQGTSHN HMVLSPDLFL PSMATILHLP PVITLPPEEP KTKKKRSLPG  60
NPDPEAEVIA LSPRALVATN RFICEVCNKG FQRDQNLQLH RRGHNLPWKL SSSRQKQNQN  120
QNQQQQPASA AAAASSRKRV YVCPEATCVH HDPARALGDL TGIKKHYSRK HGEKRWRCER  180
CGKRYAVCSD WKAHVKNCGT REYRCDCGIL FSRKDSLLTH RAFCDALAEE SARILAAAAA  240
NNNSSSITTC NNISSIISHN NNINSSCSNN NNLLITTTTS SSSPPLFLPF STPAVENPNP  300
TNPLLFLQQH QSHQLQLPQF QPPSPPAAYF DNNLPFGVAI TGSNDDNSSI AGGDVMGDHS  360
VISFGLTSEG SVTMHAGSRR RLVDFLGVDH DAGEVEELDH HLPLSTAVSR AACCATDFGR  420
RLPPVNETWS HNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-31172243372Zinc finger protein JACKDAW
5b3h_F2e-31172243372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269|PubMed:18725639, ECO:0000269|PubMed:18774969, ECO:0000269|PubMed:18790997, ECO:0000269|PubMed:24280027, ECO:0000303|PubMed:19304997}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G07370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269|PubMed:25036785, ECO:0000269|PubMed:25573482, ECO:0000269|PubMed:25850808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614407.11e-167protein indeterminate-domain 12
SwissprotB1B5341e-168EHD2_ORYSJ; Protein EARLY HEADING DATE 2
TrEMBLA0A0D9XJS20.0A0A0D9XJS2_9ORYZ; Uncharacterized protein
STRINGLPERR10G07370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-84C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Park SJ, et al.
    Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
    Plant J., 2008. 56(6): p. 1018-29
    [PMID:18774969]
  3. Song Y,Gao Z,Luan W
    Interaction between temperature and photoperiod in regulation of flowering time in rice.
    Sci China Life Sci, 2012. 55(3): p. 241-9
    [PMID:22527521]
  4. Hu S, et al.
    A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.
    Rice (N Y), 2013. 6(1): p. 24
    [PMID:24280027]
  5. Cai Y, et al.
    Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice.
    PLoS ONE, 2014. 9(7): p. e102529
    [PMID:25036785]
  6. Yoshitake Y, et al.
    The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.
    Sci Rep, 2015. 5: p. 7709
    [PMID:25573482]
  7. Han SH,Yoo SC,Lee BD,An G,Paek NC
    Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.
    Plant Cell Environ., 2015. 38(12): p. 2527-40
    [PMID:25850808]
  8. Jin J, et al.
    MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant Physiol., 2015. 168(4): p. 1275-85
    [PMID:25855537]
  9. Brambilla V,Gomez-Ariza J,Cerise M,Fornara F
    The Importance of Being on Time: Regulatory Networks Controlling Photoperiodic Flowering in Cereals.
    Front Plant Sci, 2017. 8: p. 665
    [PMID:28491078]